Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yggs family pyridoxal phosphate-dependent enzyme | DWZ06_03425 | Not Available | Positive | 804421 - 805089 | 25398.4 |
| dihydroorotate dehydrogenase-like protein | DWZ06_03430 | Not Available | Positive | 805103 - 806077 | 35625.3 |
| long-chain fatty acid--coa ligase | DWZ06_03435 | Not Available | Positive | 806254 - 807912 | 62518.7 |
| hypothetical protein | DWZ06_03440 | Not Available | Positive | 808166 - 809551 | 48513.0 |
| duf3943 domain-containing protein | DWZ06_03445 | Not Available | Positive | 809590 - 811062 | 56328.4 |
| crp/fnr family transcriptional regulator | DWZ06_03450 | Not Available | Negative | 811059 - 811637 | 22566.6 |
| peptidase | DWZ06_03455 | Not Available | Positive | 811780 - 813378 | 60242.0 |
| aminopeptidase | DWZ06_03460 | Not Available | Positive | 813410 - 814600 | 45272.6 |
| s9 family peptidase | DWZ06_03465 | Not Available | Positive | 814731 - 816962 | 84409.6 |
| hypothetical protein | DWZ06_03470 | Not Available | Positive | 817133 - 818620 | 56276.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

