Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_03375 | Not Available | Negative | 795722 - 795920 | 7925.88 |
| hypothetical protein | DWZ06_03380 | Not Available | Negative | 795967 - 796473 | 19772.7 |
| glycosyltransferase | DWZ06_03385 | Not Available | Positive | 796678 - 797835 | 44760.3 |
| antibiotic biosynthesis monooxygenase | DWZ06_03390 | Not Available | Positive | 797884 - 798159 | 10430.6 |
| duf340 domain-containing protein | DWZ06_03395 | Not Available | Positive | 798716 - 799003 | 10298.2 |
| lysine exporter lyso family protein | DWZ06_03400 | Not Available | Positive | 798993 - 799613 | 22075.5 |
| abc transporter permease | DWZ06_03405 | Not Available | Negative | 799960 - 801204 | 46918.6 |
| pyridoxal phosphate-dependent aminotransferase | DWZ06_03410 | Not Available | Negative | 801206 - 802408 | 44969.1 |
| fucose isomerase | DWZ06_03415 | Not Available | Positive | 802574 - 803809 | 46174.3 |
| duf4494 domain-containing protein | DWZ06_03420 | Not Available | Positive | 803905 - 804387 | 18209.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

