Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_03325 | Not Available | Positive | 777874 - 778053 | 6732.38 |
| duf1566 domain-containing protein | DWZ06_03330 | Not Available | Negative | 778086 - 779636 | 54947.7 |
| arylsulfatase | DWZ06_03335 | Not Available | Negative | 779918 - 781516 | 60871.1 |
| glycoside hydrolase family 2 protein | DWZ06_03340 | Not Available | Negative | 781631 - 784309 | 101296.0 |
| glycoside hydrolase | DWZ06_03345 | Not Available | Negative | 784372 - 786453 | 80625.0 |
| duf4982 domain-containing protein | DWZ06_03350 | Not Available | Negative | 786450 - 788897 | 92739.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_03355 | Not Available | Negative | 788996 - 790537 | 59338.3 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_03360 | Not Available | Negative | 790551 - 793904 | 124319.0 |
| fecr family protein | DWZ06_03365 | Not Available | Negative | 794057 - 794992 | 36601.0 |
| rna polymerase sigma-70 factor | DWZ06_03370 | Not Available | Negative | 795047 - 795637 | 23832.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

