Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhum protein | DWZ06_00270 | Not Available | Positive | 70140 - 70502 | 13614.5 |
| dna-binding protein | DWZ06_00275 | Not Available | Negative | 70580 - 70885 | 11724.1 |
| dna-binding protein | DWZ06_00280 | Not Available | Negative | 70917 - 71216 | 11590.3 |
| hypothetical protein | DWZ06_00285 | Not Available | Negative | 71222 - 71419 | 7273.61 |
| dna-binding protein | DWZ06_00290 | Not Available | Positive | 71418 - 71780 | 14059.1 |
| dna-binding protein | DWZ06_00295 | Not Available | Positive | 71784 - 72134 | 13925.0 |
| duf4099 domain-containing protein | DWZ06_00300 | Not Available | Positive | 72155 - 73726 | 59804.1 |
| type ia dna topoisomerase | DWZ06_00305 | Not Available | Positive | 73787 - 75874 | 77608.9 |
| duf1896 domain-containing protein | DWZ06_00310 | Not Available | Positive | 75902 - 76489 | 22268.0 |
| dna methylase | DWZ06_00315 | Not Available | Positive | 76479 - 82295 | 219879.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

