Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-binding protein | DWZ06_03060 | Not Available | Negative | 717427 - 717672 | 9049.81 |
| trigger factor | DWZ06_03065 | Not Available | Positive | 718054 - 719409 | 51571.9 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | DWZ06_03070 | Not Available | Positive | 719590 - 720261 | 24864.8 |
| atp-dependent clp protease atp-binding subunit clpx | DWZ06_03075 | Not Available | Positive | 720385 - 721635 | 46679.9 |
| dna helicase recq | DWZ06_03080 | Not Available | Positive | 721793 - 723973 | 81679.6 |
| tetratricopeptide repeat protein | DWZ06_03085 | Not Available | Positive | 724112 - 725875 | 68862.5 |
| duf3244 domain-containing protein | DWZ06_03090 | Not Available | Positive | 726061 - 726495 | 16352.8 |
| abc transporter permease | DWZ06_03095 | Not Available | Positive | 726499 - 727737 | 46252.9 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ06_03100 | Not Available | Positive | 727739 - 728815 | 39746.4 |
| hypothetical protein | DWZ06_03105 | Not Available | Positive | 728857 - 729522 | 25311.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

