Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mechanosensitive ion channel family protein | DWZ06_02940 | Not Available | Negative | 694031 - 694864 | 30653.8 |
| threonylcarbamoyl-amp synthase | DWZ06_02945 | Not Available | Negative | 694913 - 695527 | 23103.3 |
| helicase | DWZ06_02950 | Not Available | Negative | 695534 - 697534 | 76903.1 |
| spfh domain-containing protein | DWZ06_02960 | Not Available | Positive | 698105 - 699055 | 35427.4 |
| arc family dna-binding protein | DWZ06_02965 | Not Available | Positive | 699064 - 699258 | 7530.27 |
| carboxypeptidase-like regulatory domain-containing protein | DWZ06_02970 | Not Available | Positive | 699419 - 700696 | 49630.8 |
| rna polymerase sigma-70 factor | DWZ06_02975 | Not Available | Positive | 700748 - 701299 | 22089.7 |
| anti-sigma factor | DWZ06_02980 | Not Available | Positive | 701296 - 702150 | 32355.8 |
| carboxypeptidase-like regulatory domain-containing protein | DWZ06_02985 | Not Available | Positive | 702160 - 703716 | 60009.5 |
| Trna-ile | Not Available | Not Available | Positive | 706724 - 706800 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

