Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4861 domain-containing protein | DWZ06_02890 | Not Available | Negative | 681560 - 682774 | 45721.1 |
| glycoside hydrolase family 28 protein | DWZ06_02895 | Not Available | Negative | 682913 - 684532 | 59146.7 |
| enoyl-acp reductase | DWZ06_02900 | Not Available | Positive | 684909 - 685766 | 31326.5 |
| gliding motility lipoprotein gldb | DWZ06_02905 | Not Available | Positive | 685774 - 686775 | 38875.2 |
| sam-dependent methyltransferase | DWZ06_02910 | Not Available | Positive | 686799 - 687503 | 26022.9 |
| hypothetical protein | DWZ06_02915 | Not Available | Negative | 687519 - 688508 | 37752.0 |
| lipoyl synthase | DWZ06_02920 | Not Available | Negative | 688566 - 689420 | 31727.3 |
| s9 family peptidase | DWZ06_02925 | Not Available | Negative | 689518 - 691719 | 83422.1 |
| tigr01212 family radical sam protein | DWZ06_02930 | Not Available | Positive | 691806 - 692732 | 35539.8 |
| fpra family a-type flavoprotein | DWZ06_02935 | Not Available | Positive | 692748 - 693935 | 44710.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

