Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitroreductase | DWZ06_02835 | Not Available | Positive | 666211 - 666711 | 18825.6 |
| oxaloacetate decarboxylase | DWZ06_02840 | Not Available | Positive | 666979 - 667230 | 8725.21 |
| oxaloacetate decarboxylase | DWZ06_02845 | Not Available | Positive | 667261 - 669123 | 68997.7 |
| sodium ion-translocating decarboxylase subunit beta | DWZ06_02850 | Not Available | Positive | 669123 - 670358 | 44261.9 |
| tlpa family protein disulfide reductase | DWZ06_02855 | Not Available | Negative | 670554 - 671903 | 50445.2 |
| thioredoxin | DWZ06_02860 | Not Available | Negative | 671905 - 673071 | 44535.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_02865 | Not Available | Negative | 673090 - 674580 | 55759.7 |
| duf4974 domain-containing protein | DWZ06_02875 | Not Available | Negative | 677970 - 679130 | 44111.5 |
| sigma-70 family rna polymerase sigma factor | DWZ06_02880 | Not Available | Negative | 679197 - 679781 | 23217.7 |
| glycoside hydrolase | DWZ06_02885 | Not Available | Negative | 679882 - 681546 | 61585.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

