Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| citrate/2-methylcitrate synthase | DWZ06_02770 | Not Available | Positive | 655896 - 657239 | 51048.6 |
| gnat family n-acetyltransferase | DWZ06_02780 | Not Available | Negative | 657917 - 658378 | 17839.6 |
| duf1295 domain-containing protein | DWZ06_02790 | Not Available | Positive | 658948 - 659712 | 29496.6 |
| nadh:flavin oxidoreductase | DWZ06_02795 | Not Available | Positive | 659775 - 660998 | 45532.4 |
| sdr family nad(p)-dependent oxidoreductase | DWZ06_02800 | Not Available | Positive | 660995 - 661855 | 31870.1 |
| dmt family transporter | DWZ06_02805 | Not Available | Negative | 661964 - 662890 | 32988.4 |
| atp-binding protein | DWZ06_02810 | Not Available | Positive | 662973 - 663794 | 31123.6 |
| duf4435 domain-containing protein | DWZ06_02815 | Not Available | Positive | 663816 - 664811 | 39179.5 |
| doxx family protein | DWZ06_02820 | Not Available | Negative | 664817 - 665257 | 16186.6 |
| had family hydrolase | DWZ06_02830 | Not Available | Negative | 665495 - 666148 | 24293.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

