Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5056 domain-containing protein | DWZ06_02720 | Not Available | Negative | 643088 - 643417 | 12355.1 |
| sigma-70 family rna polymerase sigma factor | DWZ06_02725 | Not Available | Negative | 643401 - 643949 | 21091.3 |
| hypothetical protein | DWZ06_02730 | Not Available | Negative | 643952 - 644659 | 26005.5 |
| rrna cytosine-c5-methyltransferase | DWZ06_02735 | Not Available | Positive | 644791 - 646218 | 53364.1 |
| dna topoisomerase iii | DWZ06_02740 | Not Available | Negative | 646355 - 648496 | 79859.0 |
| hypothetical protein | DWZ06_02745 | Not Available | Positive | 648769 - 649635 | 33183.5 |
| dihydrolipoamide acyltransferase | DWZ06_02750 | Not Available | Positive | 649868 - 650242 | 13062.8 |
| helicase | DWZ06_02755 | Not Available | Negative | 650427 - 652319 | 72775.6 |
| aconitate hydratase | DWZ06_02760 | Not Available | Positive | 652491 - 654734 | 81126.6 |
| nadp-dependent isocitrate dehydrogenase | DWZ06_02765 | Not Available | Positive | 654738 - 655883 | 41564.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

