Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_02620 | Not Available | Negative | 628163 - 628594 | 17029.8 |
| duf1573 domain-containing protein | DWZ06_02625 | Not Available | Positive | 628725 - 629801 | 39188.1 |
| methylmalonyl co-a mutase-associated gtpase meab | DWZ06_02630 | Not Available | Positive | 629804 - 630901 | 40361.6 |
| 6-phosphofructokinase | DWZ06_02635 | Not Available | Negative | 630990 - 631970 | 35428.5 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | DWZ06_02640 | Not Available | Negative | 632052 - 632918 | 32600.1 |
| cytidylate kinase | DWZ06_02645 | Not Available | Negative | 632911 - 633600 | 25746.8 |
| energy transducer tonb | DWZ06_02650 | Not Available | Positive | 633786 - 634469 | 25649.9 |
| polyprenyl synthetase family protein | DWZ06_02655 | Not Available | Positive | 634551 - 635528 | 36794.8 |
| tatd family deoxyribonuclease | DWZ06_02660 | Not Available | Positive | 635530 - 636303 | 29266.3 |
| Trna-ser | Not Available | Not Available | Positive | 636471 - 636558 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

