Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endo-1,4-beta-xylanase | DWZ06_02560 | Not Available | Positive | 609708 - 610829 | 42056.4 |
| alpha-n-arabinofuranosidase | DWZ06_02565 | Not Available | Positive | 610842 - 611813 | 36792.0 |
| glycoside hydrolase family 43 protein | DWZ06_02570 | Not Available | Positive | 612163 - 613899 | 64662.4 |
| tonb-dependent receptor | DWZ06_02575 | Not Available | Positive | 613941 - 617012 | 113120.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_02580 | Not Available | Positive | 617027 - 618961 | 71558.0 |
| hypothetical protein | DWZ06_02585 | Not Available | Positive | 618966 - 619151 | 7342.25 |
| isas1 family transposase | DWZ06_02595 | Not Available | Positive | 620503 - 620815 | 12133.3 |
| hypothetical protein | DWZ06_02600 | Not Available | Positive | 620772 - 620984 | 7918.74 |
| transcriptional regulator | DWZ06_02605 | Not Available | Positive | 621721 - 621936 | 7860.67 |
| alpha-2-macroglobulin | DWZ06_02615 | Not Available | Positive | 622424 - 628102 | 213500.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

