Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | DWZ06_00210 | Not Available | Positive | 53537 - 54103 | 22233.8 |
| dna-binding protein | DWZ06_00215 | Not Available | Negative | 54296 - 54976 | 25970.1 |
| helicase | DWZ06_00220 | Not Available | Positive | 55305 - 56702 | 53110.1 |
| rna polymerase sigma-70 factor | DWZ06_00230 | Not Available | Positive | 57190 - 57777 | 22880.6 |
| duf4974 domain-containing protein | DWZ06_00235 | Not Available | Positive | 57896 - 58840 | 35870.3 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_00240 | Not Available | Positive | 58994 - 62542 | 131538.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_00245 | Not Available | Positive | 62556 - 64607 | 78080.4 |
| glycoside hydrolase family 2 protein | DWZ06_00250 | Not Available | Positive | 64825 - 67302 | 93539.8 |
| hypothetical protein | DWZ06_00260 | Not Available | Negative | 68559 - 68777 | 8324.91 |
| site-specific integrase | DWZ06_00265 | Not Available | Positive | 68893 - 70128 | 47891.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

