Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | DWZ06_02510 | Not Available | Positive | 597928 - 598470 | 20885.1 |
| porin family protein | DWZ06_02515 | Not Available | Positive | 598473 - 599768 | 48098.6 |
| ribulose-phosphate 3-epimerase | DWZ06_02520 | Not Available | Positive | 599844 - 600497 | 23941.4 |
| comec family competence protein | DWZ06_02525 | Not Available | Positive | 600544 - 602463 | 72654.5 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DWZ06_02530 | Not Available | Positive | 602513 - 603553 | 39348.3 |
| duf4827 domain-containing protein | DWZ06_02535 | Not Available | Positive | 603636 - 604271 | 24167.5 |
| phosphoglucosamine mutase | DWZ06_02540 | Not Available | Positive | 604268 - 605656 | 50475.7 |
| glycoside hydrolase family 16 protein | DWZ06_02545 | Not Available | Positive | 605747 - 606538 | 30560.4 |
| mfs transporter | DWZ06_02550 | Not Available | Positive | 606866 - 608359 | 54449.7 |
| is110 family transposase | DWZ06_02555 | Not Available | Negative | 608530 - 609495 | 35628.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

