Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-antigen ligase domain-containing protein | DWZ06_02460 | Not Available | Positive | 581616 - 583268 | 62023.4 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ06_02465 | Not Available | Positive | 583321 - 584388 | 39187.2 |
| acrb/acrd/acrf family protein | DWZ06_02470 | Not Available | Positive | 584393 - 587473 | 115372.0 |
| tolc family protein | DWZ06_02475 | Not Available | Positive | 587460 - 588947 | 56925.7 |
| acrb/acrd/acrf family protein | DWZ06_02480 | Not Available | Positive | 588944 - 592120 | 121074.0 |
| n-acetylglucosamine-6-phosphate deacetylase | DWZ06_02485 | Not Available | Positive | 592211 - 593374 | 42218.9 |
| threonylcarbamoyl-amp synthase | DWZ06_02490 | Not Available | Positive | 593541 - 594116 | 21163.3 |
| chloride channel protein | DWZ06_02495 | Not Available | Positive | 594134 - 595927 | 66651.6 |
| methionyl-trna formyltransferase | DWZ06_02500 | Not Available | Positive | 595941 - 596915 | 36666.6 |
| hypothetical protein | DWZ06_02505 | Not Available | Negative | 596988 - 597770 | 29095.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

