Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrofolate reductase | DWZ06_02405 | Not Available | Positive | 569274 - 570158 | 32605.2 |
| duf108 domain-containing protein | DWZ06_02410 | Not Available | Negative | 570141 - 570929 | 28220.9 |
| hypothetical protein | DWZ06_02415 | Not Available | Positive | 571226 - 572305 | 40319.9 |
| dna-binding response regulator | DWZ06_02420 | Not Available | Negative | 573047 - 574045 | 38380.6 |
| hypothetical protein | DWZ06_02425 | Not Available | Positive | 574299 - 574520 | 7881.59 |
| hypothetical protein | DWZ06_02435 | Not Available | Positive | 575574 - 575822 | 9017.95 |
| 6-bladed beta-propeller | DWZ06_02440 | Not Available | Positive | 575911 - 577005 | 41967.5 |
| hypothetical protein | DWZ06_02445 | Not Available | Positive | 577285 - 579189 | 73726.7 |
| signal peptidase i | DWZ06_02450 | Not Available | Positive | 579198 - 580100 | 35260.9 |
| transglutaminase domain-containing protein | DWZ06_02455 | Not Available | Positive | 580102 - 581613 | 58310.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

