Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DWZ06_02255 | Not Available | Negative | 530380 - 531282 | 35088.3 |
| hypothetical protein | DWZ06_02260 | Not Available | Negative | 531334 - 531897 | 21611.7 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | DWZ06_02265 | Not Available | Negative | 531960 - 532727 | 27740.6 |
| bifunctional udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase/3-hydroxyacyl-acp dehydratase | DWZ06_02270 | Not Available | Negative | 532744 - 534129 | 51127.1 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | DWZ06_02275 | Not Available | Negative | 534135 - 535175 | 36895.4 |
| hd domain-containing protein | DWZ06_02280 | Not Available | Negative | 535308 - 536543 | 47184.2 |
| orotidine 5'-phosphate decarboxylase | DWZ06_02285 | Not Available | Negative | 536632 - 537450 | 30601.6 |
| peptide chain release factor 1 | DWZ06_02290 | Not Available | Negative | 537487 - 538602 | 42032.6 |
| hypothetical protein | DWZ06_02295 | Not Available | Negative | 538586 - 538864 | 10779.0 |
| phosphoribosylformylglycinamidine cyclo-ligase | DWZ06_02300 | Not Available | Negative | 538845 - 540014 | 42663.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

