Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tlpa family protein disulfide reductase | DWZ06_02205 | Not Available | Positive | 513831 - 515939 | 80257.7 |
| rna polymerase sigma-70 factor | DWZ06_02210 | Not Available | Positive | 516202 - 516747 | 21708.3 |
| duf4974 domain-containing protein | DWZ06_02215 | Not Available | Positive | 516876 - 517850 | 37377.9 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_02220 | Not Available | Positive | 517979 - 521380 | 126077.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_02225 | Not Available | Positive | 521398 - 523209 | 69404.4 |
| hypothetical protein | DWZ06_02230 | Not Available | Negative | 523206 - 523397 | 7400.19 |
| gfo/idh/moca family oxidoreductase | DWZ06_02235 | Not Available | Positive | 523437 - 524987 | 57379.5 |
| right-handed parallel beta-helix repeat-containing protein | DWZ06_02240 | Not Available | Positive | 525341 - 527125 | 66746.6 |
| hypothetical protein | DWZ06_02245 | Not Available | Positive | 527381 - 528154 | 29952.7 |
| alpha-l-fucosidase | DWZ06_02250 | Not Available | Negative | 528332 - 530371 | 76756.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

