Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | DWZ06_02145 | Not Available | Negative | 503312 - 504526 | 44935.4 |
| yjgp/yjgq family permease | DWZ06_02150 | Not Available | Negative | 504529 - 506427 | 72557.6 |
| hypothetical protein | DWZ06_02155 | Not Available | Negative | 506511 - 506897 | 15298.1 |
| Trna-met | Not Available | Not Available | Positive | 507101 - 507177 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 507236 - 507309 | Not Available |
| hypothetical protein | DWZ06_02175 | Not Available | Negative | 507850 - 508155 | 10723.9 |
| blai/meci/copy family transcriptional regulator | DWZ06_02185 | Not Available | Positive | 508951 - 509313 | 14012.8 |
| m56 family peptidase | DWZ06_02190 | Not Available | Positive | 509347 - 511233 | 70553.9 |
| hypothetical protein | DWZ06_02195 | Not Available | Positive | 511244 - 512587 | 51757.6 |
| thiol:disulfide interchange protein | DWZ06_02200 | Not Available | Positive | 512618 - 513808 | 44887.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

