Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 88 protein | DWZ06_02095 | Not Available | Positive | 489733 - 491148 | 53363.9 |
| l-rhamnose mutarotase | DWZ06_02100 | Not Available | Positive | 491186 - 491500 | 12242.6 |
| hybrid sensor histidine kinase/response regulator | DWZ06_02105 | Not Available | Positive | 491581 - 495867 | 162869.0 |
| hypothetical protein | DWZ06_02110 | Not Available | Negative | 495949 - 496167 | 7895.11 |
| 50s ribosomal protein l19 | DWZ06_02115 | Not Available | Negative | 496322 - 496675 | 13130.2 |
| 5'-nucleotidase | DWZ06_02120 | Not Available | Positive | 496873 - 497652 | 27882.5 |
| bifunctional metallophosphatase/5'-nucleotidase | DWZ06_02125 | Not Available | Positive | 497664 - 498506 | 31282.2 |
| beta-n-acetylglucosaminidase | DWZ06_02130 | Not Available | Positive | 498552 - 501545 | 112230.0 |
| 4fe-4s dicluster domain-containing protein | DWZ06_02135 | Not Available | Positive | 501648 - 501815 | 5717.65 |
| pyridoxal phosphate-dependent aminotransferase | DWZ06_02140 | Not Available | Negative | 501994 - 503187 | 43028.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

