Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transposon protein tran | DWZ06_20900 | Not Available | Positive | 4897230 - 4897419 | 7145.84 |
| is1182 family transposase | DWZ06_20905 | Not Available | Negative | 4897568 - 4899079 | 59173.7 |
| site-specific integrase | DWZ06_20910 | Not Available | Positive | 4899220 - 4900257 | 39806.4 |
| is256 family transposase | DWZ06_20915 | Not Available | Negative | 4900590 - 4901794 | 46045.7 |
| hypothetical protein | DWZ06_20925 | Not Available | Positive | 4902574 - 4902792 | 8279.98 |
| Trna-ser | Not Available | Not Available | Positive | 4902993 - 4903082 | Not Available |
| hypothetical protein | DWZ06_20935 | Not Available | Negative | 4903061 - 4903252 | 7188.7 |
| hypothetical protein | DWZ06_20945 | Not Available | Positive | 4903803 - 4904144 | 13614.4 |
| dde transposase | DWZ06_20950 | Not Available | Positive | 4904203 - 4904609 | 15773.2 |
| hypothetical protein | DWZ06_20955 | Not Available | Positive | 4904610 - 4904887 | 10150.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

