Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4858 domain-containing protein | DWZ06_00150 | Not Available | Positive | 33872 - 34435 | 21541.2 |
| exopolygalacturonase | DWZ06_00155 | Not Available | Negative | 34587 - 35891 | 49100.8 |
| beta-galactosidase | DWZ06_00160 | Not Available | Negative | 35933 - 38821 | 109000.0 |
| glycoside hydrolase family 28 protein | DWZ06_00165 | Not Available | Negative | 39098 - 40591 | 55328.8 |
| hypothetical protein | DWZ06_00170 | Not Available | Positive | 42068 - 42763 | 26643.0 |
| fic family protein | DWZ06_00175 | Not Available | Negative | 42954 - 43955 | 38218.1 |
| duf229 domain-containing protein | DWZ06_00190 | Not Available | Negative | 45485 - 46882 | 53462.7 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_00195 | Not Available | Negative | 46923 - 48725 | 69754.8 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_00200 | Not Available | Negative | 48740 - 52126 | 126580.0 |
| fecr family protein | DWZ06_00205 | Not Available | Negative | 52380 - 53393 | 38548.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

