Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidoligase enzyme | DWZ06_20795 | Not Available | Positive | 4880624 - 4881568 | 35989.3 |
| hypothetical protein | DWZ06_20800 | Not Available | Positive | 4881565 - 4881783 | 8430.91 |
| atp-binding protein | DWZ06_20805 | Not Available | Negative | 4882190 - 4882972 | 30383.1 |
| is21 family transposase | DWZ06_20810 | Not Available | Negative | 4882969 - 4884543 | 62118.4 |
| conjugal transfer protein | DWZ06_20815 | Not Available | Negative | 4884653 - 4885624 | 36744.6 |
| hypothetical protein | DWZ06_20820 | Not Available | Negative | 4885593 - 4886078 | 18480.0 |
| fimbrillin family protein | DWZ06_20825 | Not Available | Negative | 4886259 - 4887056 | 28085.7 |
| hypothetical protein | DWZ06_20830 | Not Available | Negative | 4887233 - 4888054 | 30751.9 |
| hypothetical protein | DWZ06_20840 | Not Available | Negative | 4889568 - 4889846 | 10632.8 |
| para family protein | DWZ06_20845 | Not Available | Negative | 4889862 - 4890659 | 29471.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

