Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_20730 | Not Available | Positive | 4868949 - 4870679 | 65732.7 |
| duf3244 domain-containing protein | DWZ06_20740 | Not Available | Negative | 4871104 - 4871475 | 14228.2 |
| hypothetical protein | DWZ06_20745 | Not Available | Negative | 4871658 - 4873535 | 72375.5 |
| hypothetical protein | DWZ06_20750 | Not Available | Positive | 4873776 - 4874027 | 9201.44 |
| hypothetical protein | DWZ06_20755 | Not Available | Positive | 4874096 - 4874293 | 7345.07 |
| mobilization protein | DWZ06_20760 | Not Available | Positive | 4874383 - 4875486 | 42190.3 |
| repa protein | DWZ06_20765 | Not Available | Positive | 4875996 - 4876592 | 22934.6 |
| hypothetical protein | DWZ06_20780 | Not Available | Negative | 4878008 - 4878847 | 32239.6 |
| mobilization protein | DWZ06_20785 | Not Available | Negative | 4879454 - 4879998 | 20972.5 |
| hypothetical protein | DWZ06_20790 | Not Available | Positive | 4880209 - 4880412 | 7493.26 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

