Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is1182 family transposase | DWZ06_20680 | Not Available | Negative | 4858503 - 4860125 | 63924.0 |
| mannose-1-phosphate guanylyltransferase | DWZ06_20685 | Not Available | Negative | 4860274 - 4861317 | 39523.2 |
| Trna-leu | Not Available | Not Available | Positive | 4861502 - 4861588 | Not Available |
| duf4091 domain-containing protein | DWZ06_20695 | Not Available | Negative | 4861961 - 4863709 | 66442.3 |
| ahpc/tsa family protein | DWZ06_20700 | Not Available | Positive | 4863859 - 4864836 | 36659.1 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_20705 | Not Available | Negative | 4864918 - 4865338 | 14530.5 |
| hypothetical protein | DWZ06_20710 | Not Available | Negative | 4865571 - 4865801 | 8734.4 |
| hypothetical protein | DWZ06_20715 | Not Available | Positive | 4866781 - 4866990 | 7751.2 |
| hypothetical protein | DWZ06_20720 | Not Available | Negative | 4867247 - 4867441 | 7871.42 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_20725 | Not Available | Positive | 4867934 - 4868925 | 37597.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

