Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_20480 | Not Available | Positive | 4826317 - 4826514 | 7556.37 |
| hypothetical protein | DWZ06_20485 | Not Available | Positive | 4826769 - 4827017 | 9863.95 |
| hypothetical protein | DWZ06_20490 | Not Available | Positive | 4827047 - 4827634 | 22205.0 |
| transcriptional regulator | DWZ06_20495 | Not Available | Positive | 4827645 - 4827935 | 10716.1 |
| malate dehydrogenase | DWZ06_20500 | Not Available | Positive | 4828179 - 4829180 | 36087.5 |
| dna primase | DWZ06_20505 | Not Available | Positive | 4829258 - 4831333 | 78774.6 |
| repb family plasmid replication initiator protein | DWZ06_20510 | Not Available | Negative | 4831958 - 4833115 | 45203.0 |
| hypothetical protein | DWZ06_20515 | Not Available | Negative | 4833278 - 4833490 | 8389.09 |
| hypothetical protein | DWZ06_20520 | Not Available | Negative | 4833480 - 4833962 | 19008.0 |
| hypothetical protein | DWZ06_20525 | Not Available | Negative | 4833996 - 4834313 | 12712.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

