Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_01985 | Not Available | Positive | 447391 - 449694 | 86415.3 |
| oligogalacturonide lyase | DWZ06_01990 | Not Available | Positive | 449915 - 451240 | 49946.5 |
| duf4976 domain-containing protein | DWZ06_01995 | Not Available | Positive | 451254 - 452648 | 51584.3 |
| glycoside hydrolase family 2 protein | DWZ06_02000 | Not Available | Positive | 452662 - 455517 | 106591.0 |
| duf4982 domain-containing protein | DWZ06_02005 | Not Available | Positive | 455723 - 458728 | 114723.0 |
| rhamnogalacturonan lyase | DWZ06_02010 | Not Available | Positive | 458853 - 460679 | 66972.9 |
| rhamnogalacturonan acetylesterase | DWZ06_02015 | Not Available | Positive | 460914 - 462470 | 57952.4 |
| hypothetical protein | DWZ06_02020 | Not Available | Positive | 462492 - 465791 | 125021.0 |
| aaa family atpase | DWZ06_02025 | Not Available | Negative | 465929 - 467479 | 60766.3 |
| hypothetical protein | DWZ06_02035 | Not Available | Negative | 468006 - 468197 | 7652.25 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

