Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rubredoxin | DWZ06_20215 | Not Available | Positive | 4775465 - 4775629 | 5868.75 |
| polyribonucleotide nucleotidyltransferase | DWZ06_20220 | Not Available | Negative | 4775814 - 4777949 | 78631.8 |
| duf4369 domain-containing protein | DWZ06_20225 | Not Available | Positive | 4778165 - 4779313 | 42886.3 |
| transcription elongation factor grea | DWZ06_20230 | Not Available | Positive | 4779514 - 4779978 | 16780.4 |
| hit family protein | DWZ06_20235 | Not Available | Positive | 4780030 - 4780437 | 15016.2 |
| hypothetical protein | DWZ06_20240 | Not Available | Positive | 4780567 - 4781379 | 29238.7 |
| hypothetical protein | DWZ06_20250 | Not Available | Positive | 4785059 - 4785379 | 11673.2 |
| type iv secretory system conjugative dna transfer family protein | DWZ06_20255 | Not Available | Positive | 4785447 - 4787051 | 61222.5 |
| mobilization protein | DWZ06_20260 | Not Available | Negative | 4787064 - 4788014 | 37427.5 |
| hypothetical protein | DWZ06_20265 | Not Available | Positive | 4788064 - 4788291 | 9124.63 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

