Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_20165 | Not Available | Negative | 4767091 - 4767666 | 22302.0 |
| mobilization protein | DWZ06_20170 | Not Available | Negative | 4767663 - 4768664 | 38395.7 |
| plasmid mobilization relaxosome protein mobc | DWZ06_20175 | Not Available | Negative | 4768661 - 4769026 | 13289.2 |
| hypothetical protein | DWZ06_20180 | Not Available | Negative | 4769194 - 4770063 | 33827.7 |
| duf3987 domain-containing protein | DWZ06_20185 | Not Available | Negative | 4770312 - 4771682 | 53328.1 |
| dna-binding protein | DWZ06_20190 | Not Available | Negative | 4771688 - 4772104 | 16451.8 |
| hypothetical protein | DWZ06_20195 | Not Available | Negative | 4772284 - 4773006 | 28604.3 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DWZ06_20200 | Not Available | Negative | 4773092 - 4773958 | 31388.7 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DWZ06_20205 | Not Available | Negative | 4773980 - 4774564 | 21445.7 |
| nad-dependent deacylase | DWZ06_20210 | Not Available | Positive | 4774692 - 4775390 | 25689.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

