Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| upf0104 family protein | DWZ06_20115 | Not Available | Negative | 4751855 - 4752859 | 37243.6 |
| ribosomal rna small subunit methyltransferase a | DWZ06_20120 | Not Available | Positive | 4752958 - 4753800 | 31940.9 |
| magnesium transporter | DWZ06_20125 | Not Available | Positive | 4753832 - 4755172 | 49694.8 |
| duf349 domain-containing protein | DWZ06_20130 | Not Available | Positive | 4755433 - 4757241 | 70097.0 |
| duf3078 domain-containing protein | DWZ06_20135 | Not Available | Negative | 4757516 - 4758910 | 53456.6 |
| ctp synthase | DWZ06_20140 | Not Available | Positive | 4759120 - 4760718 | 60081.3 |
| membrane protein insertase yidc | DWZ06_20145 | Not Available | Positive | 4760758 - 4762623 | 70945.9 |
| hypothetical protein | DWZ06_20150 | Not Available | Negative | 4762553 - 4762786 | 8750.31 |
| s9 family peptidase | DWZ06_20155 | Not Available | Positive | 4762851 - 4764956 | 79403.5 |
| hypothetical protein | DWZ06_20160 | Not Available | Positive | 4765636 - 4766787 | 44509.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

