Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna methylase | DWZ06_19905 | Not Available | Positive | 4714084 - 4714824 | 28107.2 |
| hypothetical protein | DWZ06_19910 | Not Available | Positive | 4714892 - 4715077 | 7038.37 |
| hypothetical protein | DWZ06_19915 | Not Available | Positive | 4715227 - 4715742 | 19402.8 |
| pbsx family phage terminase large subunit | DWZ06_19920 | Not Available | Positive | 4715739 - 4717007 | 48249.1 |
| phage portal protein | DWZ06_19925 | Not Available | Positive | 4717019 - 4718506 | 56908.1 |
| type ii toxin-antitoxin system higb family toxin | DWZ06_19930 | Not Available | Positive | 4718656 - 4718955 | 11878.3 |
| helix-turn-helix domain-containing protein | DWZ06_19935 | Not Available | Positive | 4718966 - 4719328 | 13358.2 |
| hypothetical protein | DWZ06_19940 | Not Available | Positive | 4719497 - 4720144 | 23579.7 |
| hypothetical protein | DWZ06_19945 | Not Available | Positive | 4720149 - 4721000 | 30546.5 |
| hypothetical protein | DWZ06_19950 | Not Available | Positive | 4721019 - 4722101 | 40771.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

