Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitroreductase family protein | DWZ06_19800 | Not Available | Negative | 4687604 - 4688209 | 23230.9 |
| signal peptide peptidase sppa | DWZ06_19805 | Not Available | Positive | 4688365 - 4690146 | 65837.9 |
| tetraacyldisaccharide 4'-kinase | DWZ06_19810 | Not Available | Positive | 4690154 - 4691254 | 42222.5 |
| purine-nucleoside phosphorylase | DWZ06_19815 | Not Available | Positive | 4691217 - 4692026 | 29940.3 |
| thiamine-phosphate kinase | DWZ06_19820 | Not Available | Positive | 4692031 - 4693071 | 38271.9 |
| Trna-phe | Not Available | Not Available | Positive | 4693189 - 4693261 | Not Available |
| tetratricopeptide repeat protein | DWZ06_19830 | Not Available | Negative | 4693582 - 4694436 | 32554.4 |
| peptide-methionine (s)-s-oxide reductase | DWZ06_19835 | Not Available | Positive | 4694554 - 4695039 | 18625.0 |
| ahpc/tsa family protein | DWZ06_19840 | Not Available | Negative | 4695108 - 4696253 | 42890.5 |
| 3-isopropylmalate dehydrogenase | DWZ06_19845 | Not Available | Negative | 4696385 - 4697446 | 39089.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

