Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_19695 | Not Available | Negative | 4665437 - 4666486 | 37599.5 |
| hypothetical protein | DWZ06_19700 | Not Available | Negative | 4666483 - 4666794 | 11014.6 |
| hypothetical protein | DWZ06_19705 | Not Available | Negative | 4666814 - 4667959 | 41861.1 |
| hypothetical protein | DWZ06_19710 | Not Available | Negative | 4667974 - 4670886 | 109859.0 |
| hypothetical protein | DWZ06_19715 | Not Available | Negative | 4670967 - 4671383 | 15536.4 |
| phage tail tape measure protein | DWZ06_19720 | Not Available | Negative | 4671387 - 4672401 | 38253.8 |
| duf882 domain-containing protein | DWZ06_19725 | Not Available | Positive | 4672402 - 4672749 | 13114.5 |
| hypothetical protein | DWZ06_19730 | Not Available | Positive | 4672753 - 4673283 | 19823.0 |
| xre family transcriptional regulator | DWZ06_19735 | Not Available | Positive | 4673615 - 4673827 | 7868.72 |
| sam-dependent dna methyltransferase | DWZ06_19740 | Not Available | Positive | 4673835 - 4675649 | 69548.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

