Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imidazole glycerol phosphate synthase subunit hisf | DWZ06_19495 | Not Available | Positive | 4630267 - 4631022 | 27251.6 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | DWZ06_19500 | Not Available | Positive | 4631187 - 4631798 | 23137.6 |
| atp-binding cassette domain-containing protein | DWZ06_19505 | Not Available | Positive | 4631803 - 4632558 | 28405.2 |
| aspartate kinase | DWZ06_19510 | Not Available | Positive | 4632666 - 4633985 | 49296.1 |
| diaminopimelate decarboxylase | DWZ06_19515 | Not Available | Positive | 4634093 - 4635253 | 42748.4 |
| atp-dependent helicase | DWZ06_19520 | Not Available | Negative | 4635371 - 4635606 | 9194.2 |
| hepn domain-containing protein | DWZ06_19525 | Not Available | Negative | 4635710 - 4636111 | 15666.6 |
| nucleotidyltransferase domain-containing protein | DWZ06_19530 | Not Available | Negative | 4636108 - 4636416 | 11591.2 |
| aaa family atpase | DWZ06_19535 | Not Available | Negative | 4636599 - 4638167 | 59945.5 |
| duf86 domain-containing protein | DWZ06_19540 | Not Available | Negative | 4638292 - 4638684 | 15191.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

