Phocaeicola vulgatus strain AF29-13

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF29-13 is a Gram-positive, rod-shaped bacterium classified as an anaerobe, which means it thrives in environments devoid of oxygen. This strain is of particular interest due to its association with Homo sapiens, indicating it is host-associated. Phocaeicola vulgatus is characterized by its single-cell arrangement and lack of mobility, as it does not possess flagella. The strain is mesophilic, suggesting it prefers moderate temperature ranges for optimal growth. With a unique biotic relationship as a free-living organism, it may play a role in the human microbiome, contributing to the complex interactions within the host's gut environment. Phocaeicola vulgatus strain AF29-13 contains one replicon and has a double membrane structure, which is typical for many bacteria and may influence its resilience and adaptability in host-associated habitats. The study of this strain can offer insights into the microbial communities residing in the human gut and their implications for human health. Given its anaerobic nature and role in the human microbiome, Phocaeicola vulgatus may contribute to various metabolic processes, including the fermentation of dietary fibers, which are essential for gut health. Understanding the specific functions and interactions of this bacterium within the microbiome could provide valuable information regarding the maintenance of gut homeostasis and the potential impact on human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF29-13

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF29-13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF29-13 AF29-13.Scaf129, whole genome

Gene Summary

Adenine Count

1434359 bp

Thymine Count

1406831 bp

Guanine Count

1033248 bp

Cytosine Count

1035378 bp

Genome Length

4910436 bp

Protein-coding Genes

3936 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
imidazole glycerol phosphate synthase subunit hisfDWZ06_19495Not AvailablePositive4630267 - 463102227251.6
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisieDWZ06_19500Not AvailablePositive4631187 - 463179823137.6
atp-binding cassette domain-containing proteinDWZ06_19505Not AvailablePositive4631803 - 463255828405.2
aspartate kinaseDWZ06_19510Not AvailablePositive4632666 - 463398549296.1
diaminopimelate decarboxylaseDWZ06_19515Not AvailablePositive4634093 - 463525342748.4
atp-dependent helicaseDWZ06_19520Not AvailableNegative4635371 - 46356069194.2
hepn domain-containing proteinDWZ06_19525Not AvailableNegative4635710 - 463611115666.6
nucleotidyltransferase domain-containing proteinDWZ06_19530Not AvailableNegative4636108 - 463641611591.2
aaa family atpaseDWZ06_19535Not AvailableNegative4636599 - 463816759945.5
duf86 domain-containing proteinDWZ06_19540Not AvailableNegative4638292 - 463868415191.7

Displaying genes 3721 – 3730 of 4010 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.