Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_19435 | Not Available | Positive | 4621061 - 4621423 | 13994.2 |
| hypothetical protein | DWZ06_19440 | Not Available | Positive | 4621789 - 4622217 | 16662.0 |
| beta-galactosidase | DWZ06_19445 | Not Available | Negative | 4622977 - 4625016 | 78030.9 |
| port family protein | DWZ06_19450 | Not Available | Negative | 4625309 - 4625989 | 25463.0 |
| hypothetical protein | DWZ06_19460 | Not Available | Positive | 4626474 - 4626662 | 7146.55 |
| Trna-asp | Not Available | Not Available | Positive | 4627605 - 4627681 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 4627708 - 4627784 | Not Available |
| formyltetrahydrofolate deformylase | DWZ06_19480 | Not Available | Positive | 4628049 - 4628906 | 33273.6 |
| imidazole glycerol phosphate synthase subunit hish | DWZ06_19485 | Not Available | Positive | 4628906 - 4629496 | 22270.8 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | DWZ06_19490 | Not Available | Positive | 4629538 - 4630257 | 26636.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

