Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutaminase | DWZ06_19335 | Not Available | Positive | 4592102 - 4593016 | 34090.9 |
| rna polymerase sigma-70 factor | DWZ06_19340 | Not Available | Negative | 4594078 - 4594626 | 22036.5 |
| fecr family protein | DWZ06_19345 | Not Available | Positive | 4595148 - 4595864 | 27531.2 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_19350 | Not Available | Positive | 4595903 - 4599304 | 126110.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_19355 | Not Available | Positive | 4599317 - 4601230 | 73439.0 |
| duf1735 domain-containing protein | DWZ06_19360 | Not Available | Positive | 4601267 - 4602619 | 50721.9 |
| carbohydrate-binding protein | DWZ06_19365 | Not Available | Positive | 4602719 - 4605628 | 110203.0 |
| gfo/idh/moca family oxidoreductase | DWZ06_19370 | Not Available | Positive | 4605760 - 4607406 | 62160.2 |
| duf4375 domain-containing protein | DWZ06_19375 | Not Available | Negative | 4607775 - 4608284 | 19574.0 |
| hypothetical protein | DWZ06_19380 | Not Available | Positive | 4608521 - 4609222 | 25285.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

