Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na/pi cotransporter family protein | DWZ06_19285 | Not Available | Negative | 4579177 - 4580868 | 62827.6 |
| nucleoside kinase | DWZ06_19290 | Not Available | Positive | 4580950 - 4582623 | 64724.8 |
| glycyl radical protein | DWZ06_19295 | Not Available | Positive | 4582925 - 4585351 | 91994.6 |
| glycyl-radical enzyme activating protein | DWZ06_19300 | Not Available | Positive | 4585356 - 4586264 | 33564.0 |
| xaa-pro aminopeptidase | DWZ06_19305 | Not Available | Negative | 4586614 - 4586844 | 8754.29 |
| rna polymerase sigma-54 factor | DWZ06_19310 | Not Available | Positive | 4586973 - 4588442 | 56144.2 |
| pap2 family protein | DWZ06_19315 | Not Available | Positive | 4588453 - 4589109 | 24797.8 |
| glycine cleavage system protein h | DWZ06_19320 | Not Available | Positive | 4589146 - 4589526 | 14151.4 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | DWZ06_19325 | Not Available | Positive | 4589651 - 4590160 | 17745.0 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) | DWZ06_19330 | Not Available | Positive | 4590244 - 4592088 | 68190.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

