Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yqge/algh family protein | DWZ06_19225 | Not Available | Negative | 4567856 - 4568446 | 22412.9 |
| hypothetical protein | DWZ06_19230 | Not Available | Positive | 4568502 - 4568699 | 7902.13 |
| Trna-asp | Not Available | Not Available | Positive | 4568677 - 4568750 | Not Available |
| hypothetical protein | DWZ06_19245 | Not Available | Negative | 4569415 - 4569882 | 18222.9 |
| mobilization protein | DWZ06_19250 | Not Available | Negative | 4570029 - 4570487 | 18105.8 |
| glycoside hydrolase family 95 protein | DWZ06_19255 | Not Available | Positive | 4570507 - 4572966 | 91904.4 |
| iron-sulfur cluster repair di-iron protein | DWZ06_19260 | Not Available | Negative | 4573046 - 4573777 | 27895.2 |
| hydroxylamine reductase | DWZ06_19265 | Not Available | Negative | 4573789 - 4575447 | 61252.5 |
| crp/fnr family transcriptional regulator | DWZ06_19270 | Not Available | Positive | 4575562 - 4576152 | 21992.1 |
| arylsulfatase | DWZ06_19275 | Not Available | Negative | 4576433 - 4577980 | 56931.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

