Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | DWZ06_18745 | Not Available | Negative | 4470716 - 4471894 | 46146.3 |
| hypothetical protein | DWZ06_18750 | Not Available | Positive | 4471997 - 4473208 | 45699.2 |
| tolc family protein | DWZ06_18755 | Not Available | Negative | 4473247 - 4474620 | 51795.2 |
| multidrug efflux rnd transporter permease subunit | DWZ06_18760 | Not Available | Negative | 4474642 - 4477743 | 113141.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ06_18765 | Not Available | Negative | 4477810 - 4479009 | 44405.6 |
| trkh family potassium uptake protein | DWZ06_18770 | Not Available | Positive | 4479501 - 4481009 | 56391.7 |
| mate family efflux transporter | DWZ06_18775 | Not Available | Positive | 4481135 - 4482517 | 50432.6 |
| rlua family pseudouridine synthase | DWZ06_18780 | Not Available | Negative | 4482563 - 4484185 | 62135.6 |
| hypothetical protein | DWZ06_18785 | Not Available | Negative | 4484233 - 4484547 | 12159.8 |
| hypothetical protein | DWZ06_18790 | Not Available | Positive | 4484736 - 4484942 | 7806.67 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

