Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase t | DWZ06_18685 | Not Available | Negative | 4452753 - 4453973 | 45287.2 |
| amidophosphoribosyltransferase | DWZ06_18690 | Not Available | Negative | 4454081 - 4455487 | 51992.8 |
| fluoride efflux transporter crcb | DWZ06_18695 | Not Available | Positive | 4455586 - 4455951 | 13272.6 |
| hypothetical protein | DWZ06_18700 | Not Available | Negative | 4456026 - 4456781 | 28172.2 |
| response regulator | DWZ06_18705 | Not Available | Positive | 4457078 - 4461067 | 152172.0 |
| pap2 family protein | DWZ06_18710 | Not Available | Positive | 4461174 - 4461791 | 23044.7 |
| 9-o-acetylesterase | DWZ06_18715 | Not Available | Positive | 4461829 - 4463745 | 72660.6 |
| type ii pantothenate kinase | DWZ06_18720 | Not Available | Positive | 4463823 - 4464647 | 29299.7 |
| arylsulfatase | DWZ06_18730 | Not Available | Negative | 4465395 - 4466912 | 57821.3 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | DWZ06_18740 | Not Available | Negative | 4467128 - 4470673 | 129303.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

