Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ybbr-like domain-containing protein | DWZ06_18635 | Not Available | Negative | 4443923 - 4444936 | 39038.4 |
| preprotein translocase subunit yajc | DWZ06_18640 | Not Available | Negative | 4444950 - 4445264 | 11609.3 |
| transcription antitermination factor nusb | DWZ06_18645 | Not Available | Negative | 4445321 - 4446247 | 36291.4 |
| duf3276 family protein | DWZ06_18650 | Not Available | Positive | 4446443 - 4446826 | 14786.4 |
| 50s ribosomal protein l25 | DWZ06_18655 | Not Available | Positive | 4447006 - 4447602 | 21429.4 |
| aminoacyl-trna hydrolase | DWZ06_18660 | Not Available | Positive | 4447627 - 4448190 | 20618.0 |
| rna-binding s4 domain-containing protein | DWZ06_18665 | Not Available | Positive | 4448190 - 4448618 | 16437.7 |
| hit family protein | DWZ06_18670 | Not Available | Negative | 4448709 - 4449134 | 16329.5 |
| sodium:proton antiporter | DWZ06_18675 | Not Available | Negative | 4449159 - 4451426 | 84385.5 |
| glycine cleavage system aminomethyltransferase gcvt | DWZ06_18680 | Not Available | Negative | 4451632 - 4452717 | 39655.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

