Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWZ06_18525 | Not Available | Negative | 4422944 - 4426051 | 114479.0 |
| histidinol-phosphatase | DWZ06_18530 | Not Available | Positive | 4426627 - 4427718 | 41809.0 |
| polyphosphate kinase | DWZ06_18535 | Not Available | Positive | 4428049 - 4428342 | 11117.0 |
| ppx/gppa family phosphatase | DWZ06_18540 | Not Available | Positive | 4428335 - 4429243 | 33916.5 |
| methylglyoxal synthase | DWZ06_18550 | Not Available | Negative | 4429711 - 4430247 | 20470.6 |
| arginase family protein | DWZ06_18555 | Not Available | Negative | 4430302 - 4431111 | 30783.7 |
| alpha-glucan family phosphorylase | DWZ06_18560 | Not Available | Negative | 4431128 - 4433686 | 98166.6 |
| sodium:proton antiporter | DWZ06_18565 | Not Available | Negative | 4433708 - 4435954 | 82348.0 |
| 6-phosphofructokinase | DWZ06_18570 | Not Available | Negative | 4435968 - 4436951 | 35605.6 |
| rna polymerase sigma factor | DWZ06_18575 | Not Available | Negative | 4437017 - 4437511 | 19138.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

