Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_18425 | Not Available | Negative | 4398935 - 4399909 | 38530.7 |
| hypothetical protein | DWZ06_18430 | Not Available | Negative | 4399921 - 4400796 | 34140.4 |
| site-specific integrase | DWZ06_18435 | Not Available | Negative | 4400849 - 4402063 | 46653.6 |
| Trna-gly | Not Available | Not Available | Positive | 4402178 - 4402253 | Not Available |
| cobalamin biosynthesis protein cobd | DWZ06_18445 | Not Available | Negative | 4402289 - 4403221 | 34501.9 |
| pyridoxal phosphate-dependent class ii aminotransferase | DWZ06_18450 | Not Available | Negative | 4403203 - 4404213 | 38747.6 |
| cobyric acid synthase | DWZ06_18455 | Not Available | Negative | 4404206 - 4405696 | 55380.6 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DWZ06_18460 | Not Available | Negative | 4405696 - 4406271 | 22231.8 |
| cobyrinate a,c-diamide synthase | DWZ06_18465 | Not Available | Negative | 4406268 - 4407596 | 49093.6 |
| putative transporter | DWZ06_18470 | Not Available | Positive | 4407832 - 4409520 | 60780.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

