Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | DWZ06_18320 | Not Available | Negative | 4378198 - 4379532 | 49945.6 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | DWZ06_18325 | Not Available | Negative | 4379542 - 4380810 | 47029.8 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | DWZ06_18330 | Not Available | Negative | 4380823 - 4382277 | 53314.3 |
| pasta domain-containing protein | DWZ06_18335 | Not Available | Negative | 4382296 - 4384476 | 80368.7 |
| hypothetical protein | DWZ06_18340 | Not Available | Negative | 4384481 - 4384855 | 14479.4 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | DWZ06_18345 | Not Available | Negative | 4384860 - 4385774 | 34333.2 |
| transcriptional regulator mraz | DWZ06_18350 | Not Available | Negative | 4385771 - 4386235 | 18115.8 |
| hypothetical protein | DWZ06_18355 | Not Available | Negative | 4386270 - 4386497 | 8935.16 |
| glycerol acyltransferase | DWZ06_18360 | Not Available | Positive | 4386603 - 4387421 | 30976.8 |
| gnat family n-acetyltransferase | DWZ06_18365 | Not Available | Positive | 4387445 - 4388425 | 37508.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

