Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m23 family peptidase | DWZ06_18220 | Not Available | Negative | 4354617 - 4355585 | 36375.9 |
| alanine--trna ligase | DWZ06_18225 | Not Available | Positive | 4355725 - 4358343 | 97398.6 |
| duf2075 domain-containing protein | DWZ06_18230 | Not Available | Negative | 4358665 - 4360083 | 53982.7 |
| hypothetical protein | DWZ06_18235 | Not Available | Positive | 4360181 - 4360867 | 25516.8 |
| duf3822 family protein | DWZ06_18240 | Not Available | Positive | 4360870 - 4361694 | 32357.8 |
| methyltransferase domain-containing protein | DWZ06_18245 | Not Available | Positive | 4361685 - 4362245 | 21359.3 |
| cardiolipin synthase | DWZ06_18250 | Not Available | Negative | 4362214 - 4363650 | 55394.1 |
| tonb-dependent receptor | DWZ06_18255 | Not Available | Negative | 4363743 - 4366640 | 108186.0 |
| hypothetical protein | DWZ06_18260 | Not Available | Negative | 4366721 - 4367125 | 15580.9 |
| 3-dehydroquinate synthase | DWZ06_18265 | Not Available | Positive | 4367223 - 4368284 | 39850.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

