Phocaeicola vulgatus strain AF29-13

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF29-13 is a Gram-positive, rod-shaped bacterium classified as an anaerobe, which means it thrives in environments devoid of oxygen. This strain is of particular interest due to its association with Homo sapiens, indicating it is host-associated. Phocaeicola vulgatus is characterized by its single-cell arrangement and lack of mobility, as it does not possess flagella. The strain is mesophilic, suggesting it prefers moderate temperature ranges for optimal growth. With a unique biotic relationship as a free-living organism, it may play a role in the human microbiome, contributing to the complex interactions within the host's gut environment. Phocaeicola vulgatus strain AF29-13 contains one replicon and has a double membrane structure, which is typical for many bacteria and may influence its resilience and adaptability in host-associated habitats. The study of this strain can offer insights into the microbial communities residing in the human gut and their implications for human health. Given its anaerobic nature and role in the human microbiome, Phocaeicola vulgatus may contribute to various metabolic processes, including the fermentation of dietary fibers, which are essential for gut health. Understanding the specific functions and interactions of this bacterium within the microbiome could provide valuable information regarding the maintenance of gut homeostasis and the potential impact on human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF29-13

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF29-13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF29-13 AF29-13.Scaf129, whole genome

Gene Summary

Adenine Count

1434359 bp

Thymine Count

1406831 bp

Guanine Count

1033248 bp

Cytosine Count

1035378 bp

Genome Length

4910436 bp

Protein-coding Genes

3936 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphatidate cytidylyltransferaseDWZ06_18170Not AvailablePositive4344272 - 434511130824.3
hypothetical proteinDWZ06_18175Not AvailableNegative4345103 - 434583727504.9
lipid-a-disaccharide synthaseDWZ06_18180Not AvailableNegative4345894 - 434703343067.6
5'/3'-nucleotidase sureDWZ06_18185Not AvailableNegative4347030 - 434780328322.7
para family proteinDWZ06_18190Not AvailablePositive4348061 - 434882828003.1
parb/repb/spo0j family partition proteinDWZ06_18195Not AvailablePositive4348832 - 434972833345.2
hypothetical proteinDWZ06_18200Not AvailablePositive4349798 - 435050526895.4
lysm peptidoglycan-binding domain-containing proteinDWZ06_18205Not AvailablePositive4350510 - 435177247706.3
bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseDWZ06_18210Not AvailablePositive4351874 - 435414486308.9
merr family transcriptional regulatorDWZ06_18215Not AvailableNegative4354236 - 435458313742.9

Displaying genes 3471 – 3480 of 4010 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.