Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ph domain-containing protein | DWZ06_18100 | Not Available | Positive | 4333308 - 4333751 | 16664.8 |
| nitroreductase | DWZ06_18125 | Not Available | Positive | 4335760 - 4336269 | 19189.8 |
| radical sam protein | DWZ06_18130 | Not Available | Negative | 4336327 - 4337220 | 33896.8 |
| transcriptional regulator | DWZ06_18135 | Not Available | Positive | 4337419 - 4337787 | 14144.3 |
| dihydrofolate reductase | DWZ06_18140 | Not Available | Negative | 4337817 - 4338335 | 19245.3 |
| is21 family transposase | DWZ06_18145 | Not Available | Positive | 4338739 - 4340337 | 61574.2 |
| aaa family atpase | DWZ06_18150 | Not Available | Positive | 4340349 - 4341104 | 28974.3 |
| Trna-gln | Not Available | Not Available | Positive | 4341339 - 4341409 | Not Available |
| ribosome silencing factor | DWZ06_18160 | Not Available | Positive | 4341730 - 4342089 | 13409.9 |
| atp-dependent metallopeptidase ftsh/yme1/tma family protein | DWZ06_18165 | Not Available | Positive | 4342107 - 4344113 | 74632.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

