Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa carboxylase biotin carboxyl carrier protein subunit | DWZ06_18045 | Not Available | Positive | 4324222 - 4324653 | 15152.5 |
| sodium ion-translocating decarboxylase subunit beta | DWZ06_18050 | Not Available | Positive | 4324655 - 4325815 | 40880.4 |
| alpha-amlyase | DWZ06_18055 | Not Available | Positive | 4325990 - 4326238 | 9267.24 |
| sdr family oxidoreductase | DWZ06_18060 | Not Available | Negative | 4326334 - 4327092 | 27233.0 |
| esterase family protein | DWZ06_18065 | Not Available | Negative | 4327097 - 4327915 | 30789.0 |
| heavy metal translocating p-type atpase | DWZ06_18070 | Not Available | Positive | 4328013 - 4329731 | 62418.2 |
| transcriptional repressor | DWZ06_18075 | Not Available | Positive | 4329745 - 4330170 | 16179.7 |
| acyltransferase | DWZ06_18080 | Not Available | Negative | 4330343 - 4331494 | 43081.8 |
| crp/fnr family transcriptional regulator | DWZ06_18085 | Not Available | Negative | 4331612 - 4332175 | 22255.1 |
| hypothetical protein | DWZ06_18095 | Not Available | Positive | 4332705 - 4333139 | 16911.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

