Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-hydroxyacid dehydrogenase | DWZ06_17995 | Not Available | Negative | 4316079 - 4317086 | 37605.3 |
| septum formation protein maf | DWZ06_18000 | Not Available | Negative | 4317153 - 4317734 | 21744.3 |
| 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase | DWZ06_18005 | Not Available | Negative | 4317752 - 4318270 | 19125.2 |
| duf2520 domain-containing protein | DWZ06_18010 | Not Available | Negative | 4318276 - 4319082 | 29767.2 |
| hypothetical protein | DWZ06_18015 | Not Available | Negative | 4319082 - 4319408 | 11882.3 |
| nad(p)h nitroreductase | DWZ06_18020 | Not Available | Negative | 4319411 - 4319947 | 20051.4 |
| gnat family n-acetyltransferase | DWZ06_18025 | Not Available | Positive | 4319993 - 4321015 | 40091.1 |
| methylmalonyl-coa epimerase | DWZ06_18030 | Not Available | Positive | 4321172 - 4321585 | 14910.1 |
| acyl-coa carboxylase subunit beta | DWZ06_18035 | Not Available | Positive | 4321688 - 4323241 | 56473.9 |
| lamin tail domain-containing protein | DWZ06_18040 | Not Available | Positive | 4323269 - 4324198 | 34102.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

