Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWZ06_17945 | Not Available | Positive | 4304076 - 4306643 | 97456.0 |
| rna polymerase sigma-70 factor | DWZ06_17950 | Not Available | Positive | 4306698 - 4307225 | 20776.9 |
| duf4974 domain-containing protein | DWZ06_17955 | Not Available | Positive | 4307222 - 4308232 | 38652.1 |
| gfo/idh/moca family oxidoreductase | DWZ06_17960 | Not Available | Negative | 4308355 - 4309596 | 47399.8 |
| glycosidase | DWZ06_17965 | Not Available | Negative | 4310055 - 4311056 | 37626.8 |
| mfs transporter | DWZ06_17970 | Not Available | Negative | 4311089 - 4312387 | 47974.8 |
| tlpa family protein disulfide reductase | DWZ06_17975 | Not Available | Negative | 4312635 - 4313156 | 19820.7 |
| mfs transporter | DWZ06_17980 | Not Available | Positive | 4313228 - 4314403 | 42786.8 |
| duf2721 domain-containing protein | DWZ06_17985 | Not Available | Negative | 4314405 - 4314794 | 14601.4 |
| duf3843 family protein | DWZ06_17990 | Not Available | Positive | 4314913 - 4316082 | 45912.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

